Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CISHQ9NSE2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CISHQ9NSE2 AL513190.1-201ENST00000621254 727 ntBASIC17.91■□□□□ 0.46
CISHQ9NSE2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.91■□□□□ 0.46
CISHQ9NSE2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CISHQ9NSE2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CISHQ9NSE2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.9■□□□□ 0.46
CISHQ9NSE2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.9■□□□□ 0.46
CISHQ9NSE2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 AC092865.6-201ENST00000642101 219 ntBASIC17.9■□□□□ 0.46
CISHQ9NSE2 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.9■□□□□ 0.46
CISHQ9NSE2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CISHQ9NSE2 AL512652.2-201ENST00000625156 1716 ntBASIC17.89■□□□□ 0.46
CISHQ9NSE2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CISHQ9NSE2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
CISHQ9NSE2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 PGAM5P1-201ENST00000518923 814 ntBASIC17.89■□□□□ 0.45
CISHQ9NSE2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CISHQ9NSE2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.89■□□□□ 0.45
CISHQ9NSE2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 PCDHA14-201ENST00000506751 2298 ntBASIC17.88■□□□□ 0.45
CISHQ9NSE2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 PDPK2P-202ENST00000562415 1191 ntBASIC17.88■□□□□ 0.45
CISHQ9NSE2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.88■□□□□ 0.45
CISHQ9NSE2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CISHQ9NSE2 AC084018.2-201ENST00000613093 2607 ntBASIC17.88■□□□□ 0.45
CISHQ9NSE2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms