Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 HMGA1P7-201ENST00000406908 502 ntBASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 KRT18P32-201ENST00000424695 1287 ntBASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AKAP8P1-201ENST00000434743 1349 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AC092474.2-201ENST00000424288 719 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 FAM58DP-201ENST00000428076 619 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AC069335.1-201ENST00000489972 472 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 DUX4L27-201ENST00000554796 1261 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 DUX4L17-201ENST00000557360 1267 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AC005412.3-201ENST00000580309 715 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 AL390955.2-201ENST00000603032 514 ntBASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.8■□□□□ 0.28
TM9SF3Q9HD45 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AC133963.1-201ENST00000504166 1679 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 CNN2P2-201ENST00000443536 909 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 CNN2P3-201ENST00000450201 906 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AL136317.3-201ENST00000618497 906 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AL161645.1-201ENST00000622716 1255 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 NKILA-202ENST00000614771 2598 ntBASIC16.79■□□□□ 0.28
TM9SF3Q9HD45 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms