Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AC073508.3-201ENST00000619697 1419 ntBASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 TSPY22P-201ENST00000427496 604 ntBASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 LINC01238-205ENST00000567549 1107 ntBASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 IGHV3-41-201ENST00000613121 348 ntBASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 AC006011.2-201ENST00000621313 1158 ntBASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CHMP1AQ9HD42 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 FAM220CP-201ENST00000395253 831 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AC103564.2-201ENST00000432853 1299 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AL671277.2-201ENST00000458060 996 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AC012306.2-201ENST00000609350 630 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 AL592071.1-201ENST00000611956 408 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 HYMAI.1-201ENST00000620949 238 ntBASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.55□□□□□ -0.08
CHMP1AQ9HD42 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms