Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL391256.1-201ENST00000443260 1855 ntBASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 MIR4453-201ENST00000584019 89 ntBASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
PAAF1Q9BRP4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 AC073389.1-201ENST00000595595 795 ntBASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 KRT8P39-201ENST00000396270 1433 ntBASIC17.81■□□□□ 0.44
PAAF1Q9BRP4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AP001094.4-201ENST00000579008 2176 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AP3S2-216ENST00000617003 1561 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 SPDYE7P-202ENST00000420373 878 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC105233.2-201ENST00000523697 349 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AF228730.5-201ENST00000530288 346 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC140878.1-201ENST00000565277 250 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 AC073439.1-201ENST00000624121 1774 ntBASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms