Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 IGHV3-47-201ENST00000425060 335 ntBASIC18.19■□□□□ 0.5
CCDC42Q96M95 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 FAM86EP-206ENST00000510506 987 ntBASIC18.19■□□□□ 0.5
CCDC42Q96M95 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 MTHFR-217ENST00000641820 1569 ntBASIC18.19■□□□□ 0.5
CCDC42Q96M95 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
CCDC42Q96M95 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 POM121L3P-201ENST00000419331 1163 ntBASIC18.18■□□□□ 0.5
CCDC42Q96M95 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 AP002414.4-201ENST00000589764 1148 ntBASIC18.18■□□□□ 0.5
CCDC42Q96M95 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 AC006277.1-201ENST00000624348 1610 ntBASIC18.18■□□□□ 0.5
CCDC42Q96M95 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 PAUPAR-201ENST00000630360 2965 ntBASIC18.18■□□□□ 0.5
CCDC42Q96M95 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC42Q96M95 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC42Q96M95 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AP002383.4-201ENST00000442518 975 ntBASIC18.17■□□□□ 0.5
CCDC42Q96M95 LINC00265-3P-201ENST00000447588 903 ntBASIC18.17■□□□□ 0.5
CCDC42Q96M95 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC013467.2-201ENST00000605472 835 ntBASIC18.17■□□□□ 0.5
CCDC42Q96M95 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AC116407.4-201ENST00000623319 1061 ntBASIC18.17■□□□□ 0.5
CCDC42Q96M95 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms