Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 AC087163.2-201ENST00000457299 853 ntBASIC19.66■□□□□ 0.74
TRIM47Q96LD4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 AL008721.1-201ENST00000609964 604 ntBASIC19.66■□□□□ 0.74
TRIM47Q96LD4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 REXO1L11P-201ENST00000620964 1927 ntBASIC19.66■□□□□ 0.74
TRIM47Q96LD4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM47Q96LD4 AC008677.1-201ENST00000519230 1561 ntBASIC19.66■□□□□ 0.74
TRIM47Q96LD4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 SPCS2P4-201ENST00000436160 681 ntBASIC19.65■□□□□ 0.74
TRIM47Q96LD4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM47Q96LD4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
TRIM47Q96LD4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM47Q96LD4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM47Q96LD4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM47Q96LD4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
TRIM47Q96LD4 AC080080.1-201ENST00000625121 2420 ntBASIC19.64■□□□□ 0.74
TRIM47Q96LD4 CROCCP2-202ENST00000412962 2773 ntBASIC19.64■□□□□ 0.73
TRIM47Q96LD4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.64■□□□□ 0.73
TRIM47Q96LD4 IGHV3-42-201ENST00000520410 361 ntBASIC19.64■□□□□ 0.73
TRIM47Q96LD4 RARRES2P8-201ENST00000566335 367 ntBASIC19.64■□□□□ 0.73
TRIM47Q96LD4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 AL645728.2-201ENST00000641974 660 ntBASIC19.64■□□□□ 0.73
TRIM47Q96LD4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM47Q96LD4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 AKAP8P1-201ENST00000434743 1349 ntBASIC19.63■□□□□ 0.73
TRIM47Q96LD4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM47Q96LD4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms