Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AC135983.4-201ENST00000564116 1262 ntBASIC16.75■□□□□ 0.27
TTC28Q96AY4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AC245884.6-201ENST00000515672 1067 ntBASIC16.75■□□□□ 0.27
TTC28Q96AY4 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 FGFR3P5-201ENST00000564496 886 ntBASIC16.75■□□□□ 0.27
TTC28Q96AY4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TTC28Q96AY4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.75■□□□□ 0.27
TTC28Q96AY4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 ENPP7P5-201ENST00000541031 1031 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AP000997.3-201ENST00000623333 2250 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC016700.1-201ENST00000429424 312 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 NKAIN1P1-201ENST00000435754 582 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC021097.1-201ENST00000607902 574 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 MIR6069-201ENST00000620069 79 ntBASIC16.74■□□□□ 0.27
TTC28Q96AY4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.74■□□□□ 0.27
TTC28Q96AY4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TTC28Q96AY4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 AP001350.2-201ENST00000625104 1094 ntBASIC16.73■□□□□ 0.27
TTC28Q96AY4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms