Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 AC022145.2-201ENST00000598203 171 ntBASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 AC013467.2-201ENST00000605472 835 ntBASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 AC012569.1-201ENST00000591191 1524 ntBASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 AL021920.2-201ENST00000624828 1351 ntBASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX2-3Q8TAU0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 BASP1P1-201ENST00000430708 665 ntBASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 AC091167.2-201ENST00000579581 588 ntBASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX2-3Q8TAU0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 TUBB8P12-201ENST00000308911 1335 ntBASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 TUBB7P-202ENST00000428444 1305 ntBASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 TUBB8P7-204ENST00000567960 1332 ntBASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX2-3Q8TAU0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX2-3Q8TAU0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms