Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX4Q33E94 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX4Q33E94 LINC01023-201ENST00000606054 436 ntBASIC15.7■□□□□ 0.1
RFX4Q33E94 AC124864.1-201ENST00000623408 392 ntBASIC15.7■□□□□ 0.1
RFX4Q33E94 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX4Q33E94 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RFX4Q33E94 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.7■□□□□ 0.1
RFX4Q33E94 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RFX4Q33E94 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RFX4Q33E94 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX4Q33E94 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.69■□□□□ 0.1
RFX4Q33E94 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RFX4Q33E94 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX4Q33E94 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.69■□□□□ 0.1
RFX4Q33E94 AL138831.2-201ENST00000606564 490 ntBASIC15.69■□□□□ 0.1
RFX4Q33E94 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.69■□□□□ 0.1
RFX4Q33E94 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RFX4Q33E94 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX4Q33E94 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX4Q33E94 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RFX4Q33E94 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX4Q33E94 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RFX4Q33E94 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX4Q33E94 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 AL135999.2-201ENST00000622438 1686 ntBASIC15.68■□□□□ 0.1
RFX4Q33E94 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AL645929.1-201ENST00000420084 975 ntBASIC15.68■□□□□ 0.1
RFX4Q33E94 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.68■□□□□ 0.1
RFX4Q33E94 TSPY22P-201ENST00000427496 604 ntBASIC15.68■□□□□ 0.1
RFX4Q33E94 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.68■□□□□ 0.1
RFX4Q33E94 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 STK25P1-201ENST00000585406 838 ntBASIC15.68■□□□□ 0.1
RFX4Q33E94 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX4Q33E94 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 LINC00895-201ENST00000629028 1637 ntBASIC15.68■□□□□ 0.1
RFX4Q33E94 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX4Q33E94 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX4Q33E94 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX4Q33E94 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
RFX4Q33E94 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms