Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC131009.4-201ENST00000624048 1740 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCDH1Q08174 KRT8P39-201ENST00000396270 1433 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDH1Q08174 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 OR7E47P-204ENST00000575924 449 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 AL031008.1-201ENST00000619963 541 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 SLC22A20-204ENST00000530038 1673 ntBASIC16.23■□□□□ 0.19
PCDH1Q08174 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH1Q08174 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PCDH1Q08174 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PCDH1Q08174 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PCDH1Q08174 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 PRSS29P-201ENST00000440800 595 ntBASIC16.22■□□□□ 0.19
PCDH1Q08174 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDH1Q08174 RNA5SP419-201ENST00000515908 135 ntBASIC16.22■□□□□ 0.19
PCDH1Q08174 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDH1Q08174 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDH1Q08174 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
PCDH1Q08174 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.22■□□□□ 0.19
PCDH1Q08174 AL773604.1-201ENST00000617417 272 ntBASIC16.22■□□□□ 0.19
PCDH1Q08174 AC005593.1-201ENST00000624894 515 ntBASIC16.22■□□□□ 0.19
PCDH1Q08174 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH1Q08174 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PCDH1Q08174 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PCDH1Q08174 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH1Q08174 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH1Q08174 AP002414.3-201ENST00000589352 1468 ntBASIC16.22■□□□□ 0.19
PCDH1Q08174 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 HCG4-201ENST00000418983 998 ntBASIC16.21■□□□□ 0.19
PCDH1Q08174 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDH1Q08174 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
PCDH1Q08174 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms