Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 CNN2P8-201ENST00000421872 913 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 AC074044.1-201ENST00000609673 707 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.91□□□□□ -0.5
PRKDCP78527 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 MAX-210ENST00000555419 765 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC11.91□□□□□ -0.5
PRKDCP78527 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
PRKDCP78527 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 NKAIN1P1-201ENST00000435754 582 ntBASIC11.91□□□□□ -0.5
PRKDCP78527 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 RERG-205ENST00000537647 935 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC11.91□□□□□ -0.5
PRKDCP78527 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
PRKDCP78527 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC11.91□□□□□ -0.5
PRKDCP78527 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 STK4-201ENST00000372801 2038 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 CSH2-202ENST00000345366 598 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 IMP3P2-201ENST00000489760 475 ntBASIC11.91□□□□□ -0.5
PRKDCP78527 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC11.91□□□□□ -0.5
PRKDCP78527 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PRKDCP78527 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.91□□□□□ -0.5
PRKDCP78527 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PRKDCP78527 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
PRKDCP78527 MGST3-203ENST00000367885 680 ntTSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.9□□□□□ -0.5
PRKDCP78527 FGFR3P5-201ENST00000564496 886 ntBASIC11.9□□□□□ -0.5
PRKDCP78527 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
PRKDCP78527 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 AC008267.1-201ENST00000474858 1069 ntBASIC11.9□□□□□ -0.5
PRKDCP78527 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC11.9□□□□□ -0.5
PRKDCP78527 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
PRKDCP78527 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC11.9□□□□□ -0.5
PRKDCP78527 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC11.9□□□□□ -0.5
PRKDCP78527 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.9□□□□□ -0.5
PRKDCP78527 AC036164.1-201ENST00000570544 333 ntBASIC11.9□□□□□ -0.5
PRKDCP78527 AL139327.4-201ENST00000612362 153 ntBASIC11.9□□□□□ -0.5
PRKDCP78527 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PRKDCP78527 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC11.9□□□□□ -0.5
PRKDCP78527 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC11.9□□□□□ -0.51
PRKDCP78527 POR-209ENST00000439269 1858 ntTSL 2 BASIC11.9□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms