Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
UBA52P62987 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
UBA52P62987 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
UBA52P62987 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
UBA52P62987 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.59□□□□□ -0.07
UBA52P62987 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.59□□□□□ -0.07
UBA52P62987 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.59□□□□□ -0.07
UBA52P62987 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.59□□□□□ -0.07
UBA52P62987 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.59□□□□□ -0.07
UBA52P62987 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.59□□□□□ -0.07
UBA52P62987 AC114341.1-201ENST00000618070 349 ntBASIC14.59□□□□□ -0.07
UBA52P62987 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
UBA52P62987 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.59□□□□□ -0.07
UBA52P62987 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
UBA52P62987 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
UBA52P62987 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 KRT8P50-201ENST00000562022 1438 ntBASIC14.58□□□□□ -0.07
UBA52P62987 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
UBA52P62987 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.58□□□□□ -0.08
UBA52P62987 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
UBA52P62987 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.58□□□□□ -0.08
UBA52P62987 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 KRT18P58-201ENST00000527480 1120 ntBASIC14.58□□□□□ -0.08
UBA52P62987 SLC25A1P1-201ENST00000528351 927 ntBASIC14.58□□□□□ -0.08
UBA52P62987 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.58□□□□□ -0.08
UBA52P62987 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.58□□□□□ -0.08
UBA52P62987 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.58□□□□□ -0.08
UBA52P62987 AC008608.2-201ENST00000606089 416 ntBASIC14.58□□□□□ -0.08
UBA52P62987 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.58□□□□□ -0.08
UBA52P62987 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
UBA52P62987 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
UBA52P62987 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
UBA52P62987 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms