Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
LMO4P61968 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.72□□□□□ -0.21
LMO4P61968 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.72□□□□□ -0.21
LMO4P61968 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC13.72□□□□□ -0.21
LMO4P61968 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMO4P61968 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.72□□□□□ -0.21
LMO4P61968 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 AC073439.1-201ENST00000624121 1774 ntBASIC13.71□□□□□ -0.21
LMO4P61968 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.71□□□□□ -0.21
LMO4P61968 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LMO4P61968 AC092580.3-201ENST00000430932 139 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.71□□□□□ -0.21
LMO4P61968 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.71□□□□□ -0.21
LMO4P61968 IGHV3-42-201ENST00000520410 361 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AP002490.2-201ENST00000524791 560 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.71□□□□□ -0.21
LMO4P61968 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.71□□□□□ -0.21
LMO4P61968 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 AC138761.1-201ENST00000584393 385 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.71□□□□□ -0.21
LMO4P61968 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 SPTSSB-204ENST00000617024 1292 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AL390754.1-201ENST00000619088 582 ntBASIC13.71□□□□□ -0.21
LMO4P61968 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMO4P61968 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
LMO4P61968 AC139713.2-201ENST00000641328 2723 ntBASIC13.71□□□□□ -0.21
LMO4P61968 AL391256.1-201ENST00000443260 1855 ntBASIC13.71□□□□□ -0.21
LMO4P61968 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LMO4P61968 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
LMO4P61968 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.71□□□□□ -0.22
LMO4P61968 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
LMO4P61968 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.7□□□□□ -0.22
LMO4P61968 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.7□□□□□ -0.22
LMO4P61968 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.7□□□□□ -0.22
LMO4P61968 AC003101.2-201ENST00000612557 442 ntBASIC13.7□□□□□ -0.22
LMO4P61968 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.7□□□□□ -0.22
LMO4P61968 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.7□□□□□ -0.22
LMO4P61968 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LMO4P61968 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LMO4P61968 AC090340.1-201ENST00000620778 4980 ntBASIC13.7□□□□□ -0.22
LMO4P61968 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMO4P61968 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.7□□□□□ -0.22
LMO4P61968 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.7□□□□□ -0.22
LMO4P61968 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms