Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
HDAC4P56524 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC4P56524 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC4P56524 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC4P56524 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC4P56524 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC4P56524 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
HDAC4P56524 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.58■□□□□ 0.41
HDAC4P56524 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC4P56524 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC4P56524 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC4P56524 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC4P56524 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.58■□□□□ 0.4
HDAC4P56524 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 PMS2P1-201ENST00000431037 1228 ntBASIC17.58■□□□□ 0.4
HDAC4P56524 PRSS29P-201ENST00000440800 595 ntBASIC17.58■□□□□ 0.4
HDAC4P56524 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.58■□□□□ 0.4
HDAC4P56524 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.58■□□□□ 0.4
HDAC4P56524 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.58■□□□□ 0.4
HDAC4P56524 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HDAC4P56524 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HDAC4P56524 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC4P56524 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HDAC4P56524 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HDAC4P56524 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HDAC4P56524 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 IL9RP2-201ENST00000423948 1312 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HDAC4P56524 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.57■□□□□ 0.4
HDAC4P56524 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.57■□□□□ 0.4
HDAC4P56524 MIR4751-201ENST00000578027 74 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 AC091167.2-201ENST00000579581 588 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.57■□□□□ 0.4
HDAC4P56524 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 Z83851.2-201ENST00000609564 659 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 ACTL9-202ENST00000612068 1252 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.57■□□□□ 0.4
HDAC4P56524 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HDAC4P56524 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC4P56524 UBALD1-205ENST00000590891 2641 ntBASIC17.57■□□□□ 0.4
HDAC4P56524 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC4P56524 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 CROCCP1-201ENST00000426910 5675 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 HLA-A-202ENST00000376806 1854 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.56■□□□□ 0.4
HDAC4P56524 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 SNX33P1-201ENST00000592116 1762 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.56■□□□□ 0.4
HDAC4P56524 IGLL3P-201ENST00000412472 434 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 VN2R19P-201ENST00000442399 1052 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.56■□□□□ 0.4
HDAC4P56524 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms