Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
NEK3P51956 AC108073.2-201ENST00000464002 357 ntBASIC17.38■□□□□ 0.37
NEK3P51956 RNA5SP416-201ENST00000516838 111 ntBASIC17.38■□□□□ 0.37
NEK3P51956 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.38■□□□□ 0.37
NEK3P51956 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.38■□□□□ 0.37
NEK3P51956 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.38■□□□□ 0.37
NEK3P51956 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.38■□□□□ 0.37
NEK3P51956 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NEK3P51956 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NEK3P51956 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.37■□□□□ 0.37
NEK3P51956 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NEK3P51956 AP002414.1-201ENST00000391405 1147 ntBASIC17.37■□□□□ 0.37
NEK3P51956 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.37■□□□□ 0.37
NEK3P51956 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 MIR4751-201ENST00000578027 74 ntBASIC17.37■□□□□ 0.37
NEK3P51956 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
NEK3P51956 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 AC092171.3-201ENST00000610122 2651 ntBASIC17.37■□□□□ 0.37
NEK3P51956 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NEK3P51956 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
NEK3P51956 LINC00554-201ENST00000564841 3011 ntBASIC17.37■□□□□ 0.37
NEK3P51956 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.36■□□□□ 0.37
NEK3P51956 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 LINC02199-201ENST00000506655 2702 ntBASIC17.36■□□□□ 0.37
NEK3P51956 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
NEK3P51956 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 KRT18P13-201ENST00000400056 1290 ntBASIC17.36■□□□□ 0.37
NEK3P51956 PTCHD3P3-201ENST00000403073 906 ntBASIC17.36■□□□□ 0.37
NEK3P51956 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.36■□□□□ 0.37
NEK3P51956 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
NEK3P51956 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 PGAM5P1-201ENST00000518923 814 ntBASIC17.36■□□□□ 0.37
NEK3P51956 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.36■□□□□ 0.37
NEK3P51956 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.36■□□□□ 0.37
NEK3P51956 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms