Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.41■□□□□ 0.06
RFC3P40938 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.41■□□□□ 0.06
RFC3P40938 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 ACTG1P14-201ENST00000446382 1122 ntBASIC15.4■□□□□ 0.06
RFC3P40938 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 AC106028.4-201ENST00000614509 607 ntBASIC15.4■□□□□ 0.06
RFC3P40938 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 AL138688.1-201ENST00000624851 1594 ntBASIC15.4■□□□□ 0.06
RFC3P40938 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFC3P40938 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.4■□□□□ 0.06
RFC3P40938 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.4■□□□□ 0.06
RFC3P40938 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.4■□□□□ 0.06
RFC3P40938 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.06
RFC3P40938 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
RFC3P40938 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RFC3P40938 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RFC3P40938 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.39■□□□□ 0.05
RFC3P40938 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RFC3P40938 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.39■□□□□ 0.05
RFC3P40938 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RFC3P40938 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RFC3P40938 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RFC3P40938 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RFC3P40938 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
RFC3P40938 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
RFC3P40938 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFC3P40938 AC004461.1-201ENST00000412461 403 ntBASIC15.39■□□□□ 0.05
RFC3P40938 HMGN1P19-201ENST00000436976 333 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms