Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN4AP35499 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.52■□□□□ 0.72
SCN4AP35499 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN4AP35499 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN4AP35499 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN4AP35499 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SCN4AP35499 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN4AP35499 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.51■□□□□ 0.71
SCN4AP35499 CALR4P-201ENST00000431943 946 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN4AP35499 RN7SL560P-201ENST00000577943 264 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 AC106872.11-201ENST00000605838 421 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 CU634019.7-201ENST00000624153 1185 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 FP236241.2-201ENST00000624906 1185 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SCN4AP35499 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN4AP35499 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SCN4AP35499 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN4AP35499 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SCN4AP35499 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN4AP35499 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.51■□□□□ 0.71
SCN4AP35499 AC079316.1-201ENST00000548397 411 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 AC036164.1-201ENST00000570544 333 ntBASIC19.51■□□□□ 0.71
SCN4AP35499 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.51■□□□□ 0.71
SCN4AP35499 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SCN4AP35499 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN4AP35499 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SCN4AP35499 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SCN4AP35499 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SCN4AP35499 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
SCN4AP35499 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 AP000974.1-201ENST00000623909 2387 ntBASIC19.5■□□□□ 0.71
SCN4AP35499 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.5■□□□□ 0.71
SCN4AP35499 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
SCN4AP35499 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN4AP35499 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN4AP35499 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN4AP35499 TDH-203ENST00000531764 1110 ntBASIC19.5■□□□□ 0.71
SCN4AP35499 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN4AP35499 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN4AP35499 BRI3BPP1-201ENST00000594224 787 ntBASIC19.5■□□□□ 0.71
SCN4AP35499 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN4AP35499 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN4AP35499 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN4AP35499 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN4AP35499 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.49■□□□□ 0.71
SCN4AP35499 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN4AP35499 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN4AP35499 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 AL158212.4-201ENST00000624062 1286 ntBASIC19.49■□□□□ 0.71
SCN4AP35499 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 AL355312.1-201ENST00000407115 2176 ntBASIC19.49■□□□□ 0.71
SCN4AP35499 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN4AP35499 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SCN4AP35499 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN4AP35499 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.49■□□□□ 0.71
SCN4AP35499 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN4AP35499 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
SCN4AP35499 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 AP000812.2-201ENST00000538934 718 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms