Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.87■□□□□ 0.61
CIITAP33076 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CIITAP33076 AC243562.1-201ENST00000560672 389 ntBASIC18.87■□□□□ 0.61
CIITAP33076 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.87■□□□□ 0.61
CIITAP33076 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.87■□□□□ 0.61
CIITAP33076 AL691403.2-201ENST00000618460 490 ntBASIC18.87■□□□□ 0.61
CIITAP33076 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CIITAP33076 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 AC106886.4-201ENST00000623557 2502 ntBASIC18.87■□□□□ 0.61
CIITAP33076 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.86■□□□□ 0.61
CIITAP33076 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CIITAP33076 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.86■□□□□ 0.61
CIITAP33076 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CIITAP33076 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CIITAP33076 KRT8P48-201ENST00000515599 1220 ntBASIC18.86■□□□□ 0.61
CIITAP33076 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.86■□□□□ 0.61
CIITAP33076 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.86■□□□□ 0.61
CIITAP33076 AL135744.1-201ENST00000565098 629 ntBASIC18.86■□□□□ 0.61
CIITAP33076 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.86■□□□□ 0.61
CIITAP33076 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.86■□□□□ 0.61
CIITAP33076 AC022145.2-201ENST00000598203 171 ntBASIC18.86■□□□□ 0.61
CIITAP33076 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.86■□□□□ 0.61
CIITAP33076 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.86■□□□□ 0.61
CIITAP33076 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CIITAP33076 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.86■□□□□ 0.61
CIITAP33076 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CIITAP33076 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CIITAP33076 AC020916.1-201ENST00000587762 1774 ntBASIC18.86■□□□□ 0.61
CIITAP33076 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.86■□□□□ 0.61
CIITAP33076 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 AC016027.1-202ENST00000607927 1699 ntBASIC18.85■□□□□ 0.61
CIITAP33076 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 DNAJB3-202ENST00000449667 1266 ntBASIC18.85■□□□□ 0.61
CIITAP33076 RN7SL589P-201ENST00000481268 310 ntBASIC18.85■□□□□ 0.61
CIITAP33076 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 AP000344.2-201ENST00000512987 629 ntBASIC18.85■□□□□ 0.61
CIITAP33076 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.85■□□□□ 0.61
CIITAP33076 AP001160.2-201ENST00000596071 487 ntBASIC18.85■□□□□ 0.61
CIITAP33076 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CIITAP33076 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CIITAP33076 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.85■□□□□ 0.61
CIITAP33076 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms