Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL8A1P27658 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.64□□□□□ -0.07
COL8A1P27658 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.64□□□□□ -0.07
COL8A1P27658 TTTY23B-201ENST00000442790 549 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 KRT223P-202ENST00000449164 1292 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.64□□□□□ -0.07
COL8A1P27658 RN7SL837P-201ENST00000463010 287 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 HLA-V-204ENST00000476601 1289 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL8A1P27658 AC135586.1-201ENST00000539323 574 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 SNX29P1-201ENST00000548357 1007 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 RN7SL219P-201ENST00000582872 296 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.64□□□□□ -0.07
COL8A1P27658 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
COL8A1P27658 COX11-210ENST00000639671 696 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.64□□□□□ -0.07
COL8A1P27658 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL8A1P27658 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 KRT8P44-201ENST00000441609 1350 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
COL8A1P27658 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL8A1P27658 TMEM14DP-201ENST00000422205 345 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.63□□□□□ -0.07
COL8A1P27658 BNIP3P42-201ENST00000454982 569 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC109635.5-201ENST00000533593 962 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.63□□□□□ -0.07
COL8A1P27658 BNIP3P29-201ENST00000598302 571 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.63□□□□□ -0.07
COL8A1P27658 AC099568.2-201ENST00000609194 695 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AL844908.2-201ENST00000609461 460 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC133552.6-201ENST00000613406 534 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 TEX28P1-201ENST00000613479 1221 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC011447.5-201ENST00000616168 564 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 TEX28P2-201ENST00000617764 1221 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.63□□□□□ -0.07
COL8A1P27658 AL109936.8-201ENST00000641772 604 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC046185.3-201ENST00000623228 1824 ntBASIC14.63□□□□□ -0.07
COL8A1P27658 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL8A1P27658 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL8A1P27658 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL8A1P27658 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL8A1P27658 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 AC016027.1-202ENST00000607927 1699 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 SPDYE19P-201ENST00000338590 713 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.62□□□□□ -0.07
COL8A1P27658 DFFBP1-201ENST00000433250 979 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms