Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.43■□□□□ 0.7
CTDNEP1O95476 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 TPM4P1-201ENST00000436100 807 ntBASIC19.43■□□□□ 0.7
CTDNEP1O95476 CXCL1P1-201ENST00000502804 216 ntBASIC19.43■□□□□ 0.7
CTDNEP1O95476 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 AL662844.1-201ENST00000546340 181 ntBASIC19.43■□□□□ 0.7
CTDNEP1O95476 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 MIR4751-201ENST00000578027 74 ntBASIC19.43■□□□□ 0.7
CTDNEP1O95476 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CTDNEP1O95476 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTDNEP1O95476 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.42■□□□□ 0.7
CTDNEP1O95476 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 GPAA1P2-202ENST00000606848 1787 ntBASIC19.42■□□□□ 0.7
CTDNEP1O95476 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 LINC02199-201ENST00000506655 2702 ntBASIC19.42■□□□□ 0.7
CTDNEP1O95476 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 HMGA1P7-201ENST00000406908 502 ntBASIC19.42■□□□□ 0.7
CTDNEP1O95476 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CTDNEP1O95476 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTDNEP1O95476 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 AC012569.1-201ENST00000591191 1524 ntBASIC19.41■□□□□ 0.7
CTDNEP1O95476 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 FDX1P1-201ENST00000449115 551 ntBASIC19.41■□□□□ 0.7
CTDNEP1O95476 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 MIR4515-201ENST00000584082 81 ntBASIC19.41■□□□□ 0.7
CTDNEP1O95476 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.41■□□□□ 0.7
CTDNEP1O95476 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTDNEP1O95476 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms