Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.86■□□□□ 0.29
SHOX2O60902 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 TSPY17P-201ENST00000450329 467 ntBASIC16.86■□□□□ 0.29
SHOX2O60902 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.86■□□□□ 0.29
SHOX2O60902 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.86■□□□□ 0.29
SHOX2O60902 AC024243.1-201ENST00000609234 778 ntBASIC16.86■□□□□ 0.29
SHOX2O60902 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.86■□□□□ 0.29
SHOX2O60902 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.86■□□□□ 0.29
SHOX2O60902 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.86■□□□□ 0.29
SHOX2O60902 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.86■□□□□ 0.29
SHOX2O60902 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
SHOX2O60902 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 AL671710.1-201ENST00000610245 2349 ntBASIC16.85■□□□□ 0.29
SHOX2O60902 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SHOX2O60902 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 ABHD17AP1-201ENST00000358206 933 ntBASIC16.85■□□□□ 0.29
SHOX2O60902 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.85■□□□□ 0.29
SHOX2O60902 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
SHOX2O60902 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SHOX2O60902 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SHOX2O60902 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHOX2O60902 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.84■□□□□ 0.29
SHOX2O60902 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SHOX2O60902 REXO1L8P-201ENST00000604378 1897 ntBASIC16.84■□□□□ 0.29
SHOX2O60902 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SHOX2O60902 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 C8orf49-201ENST00000525043 1968 ntBASIC16.84■□□□□ 0.29
SHOX2O60902 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.84■□□□□ 0.29
SHOX2O60902 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.84■□□□□ 0.29
SHOX2O60902 AC026396.1-201ENST00000419388 421 ntBASIC16.84■□□□□ 0.29
SHOX2O60902 SLC25A1P2-201ENST00000430693 912 ntBASIC16.84■□□□□ 0.29
SHOX2O60902 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.84■□□□□ 0.29
SHOX2O60902 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 AL049637.2-201ENST00000641778 930 ntBASIC16.84■□□□□ 0.29
SHOX2O60902 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms