Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GALT-202ENST00000450095 1280 ntTSL 2 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 PCDHB17P-201ENST00000539533 2393 ntBASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 Six3os1_5.1-201ENST00000611000 271 ntBASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC21.42■■□□□ 1.02
SHANK3Q9BYB0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 MIR658-201ENST00000385210 100 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 HLA-DPB2-205ENST00000435074 1188 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 KRT17P8-201ENST00000540749 863 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AC092068.3-201ENST00000587894 2016 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AL133338.1-201ENST00000565695 1517 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 SERBP1P3-201ENST00000459980 809 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AC068587.10-201ENST00000641210 219 ntBASIC21.41■■□□□ 1.02
SHANK3Q9BYB0 AL031731.1-201ENST00000642131 2094 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 SPDYE17-201ENST00000412399 783 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 FUZ-207ENST00000526575 482 ntTSL 4 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 MIR4259-201ENST00000584466 101 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 WFDC1-204ENST00000613603 549 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 AL033527.5-202ENST00000641632 1098 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 AL139011.1-202ENST00000642063 584 ntBASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK3Q9BYB0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
SHANK3Q9BYB0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
SHANK3Q9BYB0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SHANK3Q9BYB0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms