Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 HLA-A-202ENST00000376806 1854 ntBASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 CICP6-201ENST00000457191 2729 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AC011270.2-201ENST00000624293 2550 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AC079776.2-201ENST00000641154 1609 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 LINC00982-205ENST00000420957 435 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AC132008.2-207ENST00000454517 770 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 FOSL1P1-201ENST00000511041 816 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM56Q9BRZ2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 SIGLEC16-201ENST00000599858 1437 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 AC006449.5-201ENST00000610658 2098 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ALOX12P2-203ENST00000570921 1945 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 AL450487.1-201ENST00000426799 995 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 CLEC4GP1-201ENST00000596555 870 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 AL591684.3-201ENST00000605187 298 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 AC073592.4-201ENST00000623827 446 ntBASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM56Q9BRZ2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms