Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 AC004877.2-201ENST00000623941 599 ntBASIC16.72■□□□□ 0.27
VPS35Q96QK1 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 AC131009.4-201ENST00000624048 1740 ntBASIC16.72■□□□□ 0.27
VPS35Q96QK1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 PCDHB17P-201ENST00000539533 2393 ntBASIC16.71■□□□□ 0.27
VPS35Q96QK1 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 KRT19P2-202ENST00000557173 1012 ntBASIC16.71■□□□□ 0.27
VPS35Q96QK1 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 AC080080.1-201ENST00000625121 2420 ntBASIC16.71■□□□□ 0.27
VPS35Q96QK1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS35Q96QK1 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS35Q96QK1 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
VPS35Q96QK1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 BCAR1-209ENST00000546196 1340 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 AC087641.1-201ENST00000557561 1021 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 PDPK2P-202ENST00000562415 1191 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 AL031432.2-201ENST00000566714 459 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS35Q96QK1 AL928711.1-201ENST00000570165 459 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 AP001350.2-201ENST00000625104 1094 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 AC012569.1-201ENST00000591191 1524 ntBASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms