Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 AC011467.4-201ENST00000594891 528 ntBASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 AC092364.2-202ENST00000597012 1073 ntBASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FAM8A3P-201ENST00000427218 844 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CXCL1P1-201ENST00000502804 216 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC087641.1-201ENST00000557561 1021 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC007064.4-201ENST00000637740 555 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC092364.2-201ENST00000596710 2692 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 PCDH8P1-201ENST00000428983 2773 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 RNU1-129P-201ENST00000384064 167 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AC023274.1-201ENST00000418278 595 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 KRT19P2-202ENST00000557173 1012 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 U1.21-201ENST00000580816 167 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 AL009183.1-201ENST00000603760 355 ntBASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM3Q8TF72 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 AC004877.2-201ENST00000623941 599 ntBASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 AC006277.1-201ENST00000624348 1610 ntBASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms