Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 LINC02012-201ENST00000608206 1725 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AL138918.1-201ENST00000568306 659 ntBASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1AQ8TE12 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
LMX1AQ8TE12 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 MIR346-201ENST00000362234 95 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AL035633.1-201ENST00000406139 838 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 TREML5P-201ENST00000421694 576 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 KRT18P34-201ENST00000488218 1270 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AC140878.1-201ENST00000565277 250 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AJ011932.1-201ENST00000621707 465 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 FO538757.1-201ENST00000623083 1397 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 AC108860.2-201ENST00000562760 2183 ntBASIC16.33■□□□□ 0.2
LMX1AQ8TE12 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1AQ8TE12 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 FZD10-202ENST00000539839 3282 ntBASIC16.32■□□□□ 0.2
LMX1AQ8TE12 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms