Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 AC012317.2-201ENST00000623305 2251 ntBASIC22.55■■□□□ 1.2
NPHP3Q7Z494 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 SPDYE17-201ENST00000412399 783 ntBASIC22.55■■□□□ 1.2
NPHP3Q7Z494 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 AC015936.2-201ENST00000593177 259 ntBASIC22.55■■□□□ 1.2
NPHP3Q7Z494 WFDC1-204ENST00000613603 549 ntBASIC22.55■■□□□ 1.2
NPHP3Q7Z494 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AC016396.2-201ENST00000562575 1417 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 ANKRD19P-201ENST00000338192 862 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AL589987.1-201ENST00000453380 819 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 BNIP3P42-201ENST00000454982 569 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 BNIP3P29-201ENST00000598302 571 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 AC011447.5-201ENST00000616168 564 ntBASIC22.54■■□□□ 1.2
NPHP3Q7Z494 PFAS-212ENST00000625942 396 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP3Q7Z494 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 AL109936.8-201ENST00000641772 604 ntBASIC22.53■■□□□ 1.2
NPHP3Q7Z494 IMPDH1P4-201ENST00000445028 1534 ntBASIC22.53■■□□□ 1.2
NPHP3Q7Z494 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC22.53■■□□□ 1.2
NPHP3Q7Z494 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC22.52■■□□□ 1.2
NPHP3Q7Z494 AC104989.1-201ENST00000519711 778 ntBASIC22.52■■□□□ 1.2
NPHP3Q7Z494 RRP7BP-205ENST00000566851 833 ntBASIC22.52■■□□□ 1.2
NPHP3Q7Z494 MIR4538-201ENST00000581377 78 ntBASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms