Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 AL589739.1-201ENST00000607720 493 ntBASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 LINC00896-202ENST00000609602 2128 ntBASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 KRT18P34-201ENST00000488218 1270 ntBASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 LINC00895-201ENST00000629028 1637 ntBASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC88AQ3V6T2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AC093004.1-201ENST00000508850 424 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TPRX2P-201ENST00000535362 881 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 BNIP3P42-201ENST00000454982 569 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 BNIP3P29-201ENST00000598302 571 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 AC011447.5-201ENST00000616168 564 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 KRT8P49-201ENST00000604166 1432 ntBASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC88AQ3V6T2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 PP12613-201ENST00000424958 2230 ntBASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC88AQ3V6T2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms