Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 BASP1P1-201ENST00000430708 665 ntBASIC17.85■□□□□ 0.45
USP41Q3LFD5 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 AC125807.1-201ENST00000483097 614 ntBASIC17.85■□□□□ 0.45
USP41Q3LFD5 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 AC008677.1-201ENST00000519230 1561 ntBASIC17.85■□□□□ 0.45
USP41Q3LFD5 MIR4492-201ENST00000581627 80 ntBASIC17.85■□□□□ 0.45
USP41Q3LFD5 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 AC021097.1-201ENST00000607902 574 ntBASIC17.85■□□□□ 0.45
USP41Q3LFD5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP41Q3LFD5 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.85■□□□□ 0.45
USP41Q3LFD5 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 OR6D1P-202ENST00000641007 5290 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 INGX-202ENST00000489074 768 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 ALG1L8P-201ENST00000533887 760 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 AC140878.1-201ENST00000565277 250 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 MIR4745-201ENST00000577608 62 ntBASIC17.84■□□□□ 0.45
USP41Q3LFD5 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP41Q3LFD5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
USP41Q3LFD5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.83■□□□□ 0.45
USP41Q3LFD5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.83■□□□□ 0.45
USP41Q3LFD5 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
USP41Q3LFD5 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.83■□□□□ 0.45
USP41Q3LFD5 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
USP41Q3LFD5 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 AL035633.1-201ENST00000406139 838 ntBASIC17.83■□□□□ 0.44
USP41Q3LFD5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP41Q3LFD5 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
USP41Q3LFD5 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms