Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 AL355306.1-201ENST00000415580 579 ntBASIC16.21■□□□□ 0.19
COL28A1Q2UY09 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 AC096633.1-201ENST00000422446 749 ntBASIC16.21■□□□□ 0.19
COL28A1Q2UY09 FAM58DP-201ENST00000428076 619 ntBASIC16.21■□□□□ 0.19
COL28A1Q2UY09 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 HILS1-202ENST00000545329 423 ntBASIC16.21■□□□□ 0.19
COL28A1Q2UY09 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL28A1Q2UY09 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.21■□□□□ 0.18
COL28A1Q2UY09 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL28A1Q2UY09 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL28A1Q2UY09 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL28A1Q2UY09 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AC002056.1-201ENST00000395613 760 ntBASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 FAM86C2P-203ENST00000528684 1004 ntBASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.2■□□□□ 0.18
COL28A1Q2UY09 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 GNAS-203ENST00000306120 1878 ntBASIC16.2■□□□□ 0.18
COL28A1Q2UY09 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
COL28A1Q2UY09 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AC046158.3-201ENST00000624947 2558 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms