Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
FOXA1P55317 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
FOXA1P55317 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.32■□□□□ 0.2
FOXA1P55317 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
FOXA1P55317 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA1P55317 PAWRP1-201ENST00000451083 565 ntBASIC16.32■□□□□ 0.2
FOXA1P55317 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXA1P55317 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 MTDHP3-201ENST00000594186 672 ntBASIC16.32■□□□□ 0.2
FOXA1P55317 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 AL139288.1-201ENST00000623748 933 ntBASIC16.32■□□□□ 0.2
FOXA1P55317 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA1P55317 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA1P55317 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA1P55317 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
FOXA1P55317 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 TOP3BP1-201ENST00000420768 1380 ntBASIC16.31■□□□□ 0.2
FOXA1P55317 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 SART3-203ENST00000546611 1184 ntBASIC16.31■□□□□ 0.2
FOXA1P55317 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXA1P55317 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
FOXA1P55317 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
FOXA1P55317 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA1P55317 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA1P55317 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
FOXA1P55317 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA1P55317 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA1P55317 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms