Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CDX1P47902 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
CDX1P47902 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.83□□□□□ -0.2
CDX1P47902 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CDX1P47902 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
CDX1P47902 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.83□□□□□ -0.2
CDX1P47902 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 INTS4P1-201ENST00000438455 1935 ntBASIC13.83□□□□□ -0.2
CDX1P47902 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CDX1P47902 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CDX1P47902 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CDX1P47902 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.83□□□□□ -0.2
CDX1P47902 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CDX1P47902 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.82□□□□□ -0.2
CDX1P47902 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.82□□□□□ -0.2
CDX1P47902 AC096633.1-201ENST00000422446 749 ntBASIC13.82□□□□□ -0.2
CDX1P47902 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.82□□□□□ -0.2
CDX1P47902 AL160237.2-201ENST00000556165 472 ntBASIC13.82□□□□□ -0.2
CDX1P47902 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.82□□□□□ -0.2
CDX1P47902 MNT-208ENST00000575394 606 ntTSL 4 BASIC13.82□□□□□ -0.2
CDX1P47902 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.82□□□□□ -0.2
CDX1P47902 AL121912.1-201ENST00000603683 238 ntBASIC13.82□□□□□ -0.2
CDX1P47902 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 FAM45BP-202ENST00000592932 1624 ntBASIC13.82□□□□□ -0.2
CDX1P47902 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms