Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL8A1P27658 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
COL8A1P27658 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL8A1P27658 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
COL8A1P27658 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 AC135050.7-201ENST00000624508 2218 ntBASIC14.66□□□□□ -0.06
COL8A1P27658 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.66□□□□□ -0.06
COL8A1P27658 AC106886.1-201ENST00000568660 600 ntBASIC14.66□□□□□ -0.06
COL8A1P27658 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.66□□□□□ -0.06
COL8A1P27658 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.66□□□□□ -0.06
COL8A1P27658 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL8A1P27658 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL8A1P27658 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.66□□□□□ -0.06
COL8A1P27658 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.66□□□□□ -0.06
COL8A1P27658 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL8A1P27658 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 AP3S2-216ENST00000617003 1561 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.65□□□□□ -0.06
COL8A1P27658 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.65□□□□□ -0.06
COL8A1P27658 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.65□□□□□ -0.06
COL8A1P27658 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.65□□□□□ -0.06
COL8A1P27658 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 RARRES2P9-201ENST00000565168 469 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 AC007967.4-201ENST00000614700 386 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 MIR6787-201ENST00000616675 61 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 MIR6775-201ENST00000617557 69 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.65□□□□□ -0.06
COL8A1P27658 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.65□□□□□ -0.06
COL8A1P27658 AL096828.2-201ENST00000567259 1965 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 AC090164.3-201ENST00000610780 2143 ntBASIC14.65□□□□□ -0.06
COL8A1P27658 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL8A1P27658 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL8A1P27658 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.65□□□□□ -0.07
COL8A1P27658 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.64□□□□□ -0.07
COL8A1P27658 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 LTB4R2-202ENST00000528054 3092 ntBASIC14.64□□□□□ -0.07
COL8A1P27658 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL8A1P27658 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL8A1P27658 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms