Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.93■□□□□ 0.14
COL5A1P20908 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 AL512384.1-201ENST00000406683 331 ntBASIC15.93■□□□□ 0.14
COL5A1P20908 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.93■□□□□ 0.14
COL5A1P20908 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.93■□□□□ 0.14
COL5A1P20908 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.93■□□□□ 0.14
COL5A1P20908 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL5A1P20908 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.93■□□□□ 0.14
COL5A1P20908 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
COL5A1P20908 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.93■□□□□ 0.14
COL5A1P20908 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 KRT8P12-202ENST00000472924 1397 ntBASIC15.92■□□□□ 0.14
COL5A1P20908 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.92■□□□□ 0.14
COL5A1P20908 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.92■□□□□ 0.14
COL5A1P20908 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 RN7SL837P-201ENST00000463010 287 ntBASIC15.92■□□□□ 0.14
COL5A1P20908 RN7SL618P-201ENST00000477850 296 ntBASIC15.92■□□□□ 0.14
COL5A1P20908 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.92■□□□□ 0.14
COL5A1P20908 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.92■□□□□ 0.14
COL5A1P20908 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.92■□□□□ 0.14
COL5A1P20908 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.92■□□□□ 0.14
COL5A1P20908 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.92■□□□□ 0.14
COL5A1P20908 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL5A1P20908 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL5A1P20908 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.92■□□□□ 0.14
COL5A1P20908 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL5A1P20908 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
COL5A1P20908 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.91■□□□□ 0.14
COL5A1P20908 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC098859.1-201ENST00000502915 1238 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 SPDYE18-201ENST00000510091 1050 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.91■□□□□ 0.14
COL5A1P20908 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC024267.1-201ENST00000582320 895 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL5A1P20908 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 LETM1P2-201ENST00000597330 2178 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC114501.2-201ENST00000439631 535 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 INE1-201ENST00000456273 945 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.91■□□□□ 0.14
COL5A1P20908 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL5A1P20908 AC099568.2-201ENST00000609194 695 ntBASIC15.91■□□□□ 0.14
COL5A1P20908 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.91■□□□□ 0.14
COL5A1P20908 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.91■□□□□ 0.14
COL5A1P20908 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL5A1P20908 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms