Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.18■□□□□ 0.34
COL9A1P20849 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.18■□□□□ 0.34
COL9A1P20849 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.18■□□□□ 0.34
COL9A1P20849 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 SPDYE19P-201ENST00000338590 713 ntBASIC17.18■□□□□ 0.34
COL9A1P20849 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 KRT43P-201ENST00000434019 910 ntBASIC17.18■□□□□ 0.34
COL9A1P20849 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.18■□□□□ 0.34
COL9A1P20849 AC007551.1-201ENST00000457394 519 ntBASIC17.18■□□□□ 0.34
COL9A1P20849 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.18■□□□□ 0.34
COL9A1P20849 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.18■□□□□ 0.34
COL9A1P20849 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.18■□□□□ 0.34
COL9A1P20849 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.18■□□□□ 0.34
COL9A1P20849 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.18■□□□□ 0.34
COL9A1P20849 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.18■□□□□ 0.34
COL9A1P20849 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
COL9A1P20849 AC087499.5-201ENST00000452760 1342 ntBASIC17.18■□□□□ 0.34
COL9A1P20849 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
COL9A1P20849 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.17■□□□□ 0.34
COL9A1P20849 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 HMGA1P7-201ENST00000406908 502 ntBASIC17.17■□□□□ 0.34
COL9A1P20849 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 CTBP2P5-201ENST00000454986 1264 ntBASIC17.17■□□□□ 0.34
COL9A1P20849 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.17■□□□□ 0.34
COL9A1P20849 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.17■□□□□ 0.34
COL9A1P20849 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.17■□□□□ 0.34
COL9A1P20849 MIR4515-201ENST00000584082 81 ntBASIC17.17■□□□□ 0.34
COL9A1P20849 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.17■□□□□ 0.34
COL9A1P20849 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
COL9A1P20849 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.17■□□□□ 0.34
COL9A1P20849 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL9A1P20849 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL9A1P20849 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.16■□□□□ 0.34
COL9A1P20849 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.16■□□□□ 0.34
COL9A1P20849 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 FAM21FP-201ENST00000426241 1131 ntBASIC17.16■□□□□ 0.34
COL9A1P20849 CALR4P-201ENST00000431943 946 ntBASIC17.16■□□□□ 0.34
COL9A1P20849 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.16■□□□□ 0.34
COL9A1P20849 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.16■□□□□ 0.34
COL9A1P20849 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.16■□□□□ 0.34
COL9A1P20849 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.16■□□□□ 0.34
COL9A1P20849 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.16■□□□□ 0.34
COL9A1P20849 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms