Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PDGFBP01127 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDGFBP01127 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 CDC14C-201ENST00000428251 1719 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 AC099336.1-201ENST00000417053 1171 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.73■□□□□ 0.27
PDGFBP01127 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 AL355994.2-201ENST00000447882 704 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.73■□□□□ 0.27
PDGFBP01127 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.73■□□□□ 0.27
PDGFBP01127 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 AC015936.2-201ENST00000593177 259 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
PDGFBP01127 MIR8072-201ENST00000614241 80 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.73■□□□□ 0.27
PDGFBP01127 AL033527.5-202ENST00000641632 1098 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.73■□□□□ 0.27
PDGFBP01127 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PDGFBP01127 LINC00304-203ENST00000565008 1864 ntBASIC16.73■□□□□ 0.27
PDGFBP01127 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDGFBP01127 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PDGFBP01127 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 AC005229.1-201ENST00000392885 409 ntBASIC16.72■□□□□ 0.27
PDGFBP01127 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.72■□□□□ 0.27
PDGFBP01127 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.72■□□□□ 0.27
PDGFBP01127 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.72■□□□□ 0.27
PDGFBP01127 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.72■□□□□ 0.27
PDGFBP01127 MIR4492-201ENST00000581627 80 ntBASIC16.72■□□□□ 0.27
PDGFBP01127 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.72■□□□□ 0.27
PDGFBP01127 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFBP01127 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
PDGFBP01127 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFBP01127 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.72■□□□□ 0.27
PDGFBP01127 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 KRT43P-201ENST00000434019 910 ntBASIC16.71■□□□□ 0.27
PDGFBP01127 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.71■□□□□ 0.27
PDGFBP01127 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.71■□□□□ 0.27
PDGFBP01127 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
PDGFBP01127 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.71■□□□□ 0.27
PDGFBP01127 AL139099.5-201ENST00000635274 300 ntBASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms