Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TOP3BP1-201ENST00000420768 1380 ntBASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AC008738.7-201ENST00000609744 511 ntBASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 AL512384.1-201ENST00000406683 331 ntBASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 HNRNPA3P5-201ENST00000455201 833 ntBASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 NOP2-211ENST00000540228 668 ntTSL 2 BASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 WASH4P-201ENST00000564273 1246 ntBASIC31.72■■■□□ 2.67
SHROOM4Q9ULL8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 AC027307.2-201ENST00000591252 911 ntBASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
SHROOM4Q9ULL8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM4Q9ULL8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 MIR4525-201ENST00000580000 75 ntBASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 AL033527.4-201ENST00000641026 673 ntBASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC31.7■■■□□ 2.66
SHROOM4Q9ULL8 AC016396.2-201ENST00000562575 1417 ntBASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 PGF-202ENST00000405431 666 ntTSL 5 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 HCG4-201ENST00000418983 998 ntBASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 AC092658.1-201ENST00000505836 891 ntBASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 AC016027.1-202ENST00000607927 1699 ntBASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHROOM4Q9ULL8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 DFFBP1-201ENST00000433250 979 ntBASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 INE1-201ENST00000456273 945 ntBASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms