Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AC005412.3-201ENST00000580309 715 ntBASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AC140113.2-201ENST00000604370 208 ntBASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AC013467.2-201ENST00000605472 835 ntBASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 SNX33P1-201ENST00000592116 1762 ntBASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS54Q9P1Q0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.39■□□□□ 0.7
VPS54Q9P1Q0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS54Q9P1Q0 HLA-A-202ENST00000376806 1854 ntBASIC19.39■□□□□ 0.7
VPS54Q9P1Q0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 AL513480.1-201ENST00000451731 511 ntBASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 PCDHA14-201ENST00000506751 2298 ntBASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
VPS54Q9P1Q0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 MED15P5-201ENST00000423150 992 ntBASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 AC096734.2-201ENST00000562054 433 ntBASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 CYP2A7P1-201ENST00000595391 815 ntBASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS54Q9P1Q0 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms