Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 MIR1199-201ENST00000621445 119 ntBASIC18.06■□□□□ 0.48
SIX2Q9NPC8 AC004790.2-201ENST00000623588 572 ntBASIC18.06■□□□□ 0.48
SIX2Q9NPC8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 MRPL3P1-201ENST00000400109 1033 ntBASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AC005412.3-201ENST00000580309 715 ntBASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 ACTL9-202ENST00000612068 1252 ntBASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX2Q9NPC8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 AC004870.1-201ENST00000315132 882 ntBASIC18.04■□□□□ 0.48
SIX2Q9NPC8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 AL160237.2-201ENST00000556165 472 ntBASIC18.04■□□□□ 0.48
SIX2Q9NPC8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 PGM5P2-202ENST00000637225 1043 ntBASIC18.04■□□□□ 0.48
SIX2Q9NPC8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MTHFR-217ENST00000641820 1569 ntBASIC18.04■□□□□ 0.48
SIX2Q9NPC8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX2Q9NPC8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX2Q9NPC8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.03■□□□□ 0.48
SIX2Q9NPC8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX2Q9NPC8 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX2Q9NPC8 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms