Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 FAM197Y8-203ENST00000450145 560 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 EMBP1-201ENST00000458200 901 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 AF186996.4-201ENST00000467186 377 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 SNX33P1-201ENST00000592116 1762 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 AC006449.5-201ENST00000610658 2098 ntBASIC16.12■□□□□ 0.17
BRF2Q9HAW0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BRF2Q9HAW0 KRT8P39-201ENST00000396270 1433 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 KRT18P67-201ENST00000432816 1264 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 IGHV3-65-201ENST00000523210 341 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC107918.2-201ENST00000530817 355 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC105339.3-201ENST00000560043 636 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC005412.3-201ENST00000580309 715 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 TP73-AS1-207ENST00000624167 988 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 ME2P1-201ENST00000426028 1970 ntBASIC16.11■□□□□ 0.17
BRF2Q9HAW0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
BRF2Q9HAW0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 CYP2T1P-202ENST00000641596 2535 ntBASIC16.1■□□□□ 0.17
BRF2Q9HAW0 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 DUSP5P1-201ENST00000441325 1139 ntBASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 AL356488.2-201ENST00000602755 427 ntBASIC16.1■□□□□ 0.17
BRF2Q9HAW0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
BRF2Q9HAW0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms