Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ACTG1P4-201ENST00000425123 1122 ntBASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 AC073592.5-201ENST00000624854 528 ntBASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 AL139011.1-202ENST00000642063 584 ntBASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 PAUPAR-201ENST00000630360 2965 ntBASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 RNF152P1-201ENST00000397754 604 ntBASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 SPDYE13P-201ENST00000445314 798 ntBASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC28BQ9BUN5 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 AC113347.1-201ENST00000413321 391 ntBASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 AL137013.1-201ENST00000432946 1228 ntBASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms