Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 ALG1L8P-201ENST00000533887 760 ntBASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AC092364.2-202ENST00000597012 1073 ntBASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AL096865.1-201ENST00000606796 927 ntBASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AC021097.1-201ENST00000607902 574 ntBASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PAAF1Q9BRP4 AL645728.1-201ENST00000366221 2101 ntBASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 KLF2P3-201ENST00000451977 1087 ntBASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 AC067863.1-201ENST00000494933 530 ntBASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.87■□□□□ 0.45
PAAF1Q9BRP4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 AC142381.1-201ENST00000426099 345 ntBASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 AC013467.2-201ENST00000605472 835 ntBASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 FOXO1B-201ENST00000504678 1527 ntBASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PAAF1Q9BRP4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms