Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.53□□□□□ -0.08
COL12A1Q99715 KLF2P4-201ENST00000451959 1225 ntBASIC14.53□□□□□ -0.08
COL12A1Q99715 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 AL365330.1-201ENST00000607459 531 ntBASIC14.53□□□□□ -0.08
COL12A1Q99715 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC14.53□□□□□ -0.08
COL12A1Q99715 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.53□□□□□ -0.08
COL12A1Q99715 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL12A1Q99715 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL12A1Q99715 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.52□□□□□ -0.08
COL12A1Q99715 AC055876.2-201ENST00000531834 546 ntBASIC14.52□□□□□ -0.08
COL12A1Q99715 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.52□□□□□ -0.08
COL12A1Q99715 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL12A1Q99715 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.52□□□□□ -0.08
COL12A1Q99715 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.52□□□□□ -0.08
COL12A1Q99715 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL12A1Q99715 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.52□□□□□ -0.08
COL12A1Q99715 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.52□□□□□ -0.08
COL12A1Q99715 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
COL12A1Q99715 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.52□□□□□ -0.08
COL12A1Q99715 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.52□□□□□ -0.08
COL12A1Q99715 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
COL12A1Q99715 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.52□□□□□ -0.08
COL12A1Q99715 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.52□□□□□ -0.08
COL12A1Q99715 U62317.3-201ENST00000608319 855 ntBASIC14.52□□□□□ -0.08
COL12A1Q99715 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
COL12A1Q99715 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 AC131009.4-201ENST00000624048 1740 ntBASIC14.52□□□□□ -0.09
COL12A1Q99715 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
COL12A1Q99715 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
COL12A1Q99715 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.52□□□□□ -0.09
COL12A1Q99715 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.52□□□□□ -0.09
COL12A1Q99715 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.52□□□□□ -0.09
COL12A1Q99715 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL12A1Q99715 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.52□□□□□ -0.09
COL12A1Q99715 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL12A1Q99715 NOC2LP1-202ENST00000452600 2235 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.51□□□□□ -0.09
COL12A1Q99715 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL12A1Q99715 HLA-H-201ENST00000383620 1096 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.51□□□□□ -0.09
COL12A1Q99715 AL353705.2-201ENST00000428243 662 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 RN7SL560P-201ENST00000577943 264 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC14.51□□□□□ -0.09
COL12A1Q99715 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL12A1Q99715 WIZP1-201ENST00000531444 2299 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.51□□□□□ -0.09
COL12A1Q99715 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.51□□□□□ -0.09
COL12A1Q99715 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
COL12A1Q99715 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.51□□□□□ -0.09
COL12A1Q99715 MIR33B-201ENST00000385104 96 ntBASIC14.51□□□□□ -0.09
COL12A1Q99715 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.51□□□□□ -0.09
COL12A1Q99715 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.51□□□□□ -0.09
COL12A1Q99715 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL12A1Q99715 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.51□□□□□ -0.09
COL12A1Q99715 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL12A1Q99715 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms