Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
USP28Q96RU2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
USP28Q96RU2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.29■□□□□ 0.68
USP28Q96RU2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 AC091304.2-201ENST00000564639 760 ntBASIC19.29■□□□□ 0.68
USP28Q96RU2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.29■□□□□ 0.68
USP28Q96RU2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.29■□□□□ 0.68
USP28Q96RU2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.29■□□□□ 0.68
USP28Q96RU2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.29■□□□□ 0.68
USP28Q96RU2 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.29■□□□□ 0.68
USP28Q96RU2 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
USP28Q96RU2 AL513523.2-202ENST00000427283 2040 ntBASIC19.29■□□□□ 0.68
USP28Q96RU2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
USP28Q96RU2 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
USP28Q96RU2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.28■□□□□ 0.68
USP28Q96RU2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.28■□□□□ 0.68
USP28Q96RU2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.28■□□□□ 0.68
USP28Q96RU2 AF238378.1-201ENST00000526806 358 ntBASIC19.28■□□□□ 0.68
USP28Q96RU2 AC021087.4-201ENST00000563761 564 ntBASIC19.28■□□□□ 0.68
USP28Q96RU2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.28■□□□□ 0.68
USP28Q96RU2 MIR4492-201ENST00000581627 80 ntBASIC19.28■□□□□ 0.68
USP28Q96RU2 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.28■□□□□ 0.68
USP28Q96RU2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USP28Q96RU2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.28■□□□□ 0.68
USP28Q96RU2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP28Q96RU2 AC046158.3-201ENST00000624947 2558 ntBASIC19.28■□□□□ 0.68
USP28Q96RU2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.28■□□□□ 0.68
USP28Q96RU2 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.27■□□□□ 0.68
USP28Q96RU2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.27■□□□□ 0.68
USP28Q96RU2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.27■□□□□ 0.68
USP28Q96RU2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.27■□□□□ 0.68
USP28Q96RU2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.27■□□□□ 0.68
USP28Q96RU2 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 SLC25A6P2-201ENST00000497974 877 ntBASIC19.27■□□□□ 0.68
USP28Q96RU2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.27■□□□□ 0.68
USP28Q96RU2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.27■□□□□ 0.68
USP28Q96RU2 AC012313.10-201ENST00000623509 926 ntBASIC19.27■□□□□ 0.68
USP28Q96RU2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.27■□□□□ 0.68
USP28Q96RU2 AL512652.2-201ENST00000625156 1716 ntBASIC19.27■□□□□ 0.68
USP28Q96RU2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
USP28Q96RU2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP28Q96RU2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP28Q96RU2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP28Q96RU2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP28Q96RU2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP28Q96RU2 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP28Q96RU2 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
USP28Q96RU2 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.27■□□□□ 0.67
USP28Q96RU2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
USP28Q96RU2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms