Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHROOM3Q8TF72 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHROOM3Q8TF72 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SHROOM3Q8TF72 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
SHROOM3Q8TF72 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.14■□□□□ 0.34
SHROOM3Q8TF72 AC104109.2-201ENST00000602919 1418 ntBASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 AL031731.1-201ENST00000642131 2094 ntBASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 IGLL3P-201ENST00000412472 434 ntBASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHROOM3Q8TF72 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 HCG4-201ENST00000418983 998 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 ADH5P3-201ENST00000433842 1137 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 SPCS2P1-201ENST00000561636 679 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC013467.2-201ENST00000605472 835 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 ACTL9-202ENST00000612068 1252 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC040169.1-201ENST00000565382 521 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC091167.2-201ENST00000579581 588 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC005412.3-201ENST00000580309 715 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AL031055.1-201ENST00000606362 631 ntBASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHROOM3Q8TF72 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 AC005052.1-201ENST00000625181 2492 ntBASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 KRT18P3-201ENST00000451602 1288 ntBASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SHROOM3Q8TF72 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms