Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
USP39Q53GS9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
USP39Q53GS9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.14■□□□□ 0.34
USP39Q53GS9 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.14■□□□□ 0.34
USP39Q53GS9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USP39Q53GS9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.14■□□□□ 0.33
USP39Q53GS9 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.14■□□□□ 0.33
USP39Q53GS9 AC069335.1-201ENST00000489972 472 ntBASIC17.14■□□□□ 0.33
USP39Q53GS9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.14■□□□□ 0.33
USP39Q53GS9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.14■□□□□ 0.33
USP39Q53GS9 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.14■□□□□ 0.33
USP39Q53GS9 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.14■□□□□ 0.33
USP39Q53GS9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP39Q53GS9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.14■□□□□ 0.33
USP39Q53GS9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
USP39Q53GS9 TFAMP1-201ENST00000412727 736 ntBASIC17.13■□□□□ 0.33
USP39Q53GS9 KRT18P32-201ENST00000424695 1287 ntBASIC17.13■□□□□ 0.33
USP39Q53GS9 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.13■□□□□ 0.33
USP39Q53GS9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.13■□□□□ 0.33
USP39Q53GS9 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.13■□□□□ 0.33
USP39Q53GS9 AC099522.2-201ENST00000607001 744 ntBASIC17.13■□□□□ 0.33
USP39Q53GS9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 AL138688.1-201ENST00000624851 1594 ntBASIC17.13■□□□□ 0.33
USP39Q53GS9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 LINC00304-203ENST00000565008 1864 ntBASIC17.13■□□□□ 0.33
USP39Q53GS9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
USP39Q53GS9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.13■□□□□ 0.33
USP39Q53GS9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP39Q53GS9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.13■□□□□ 0.33
USP39Q53GS9 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.12■□□□□ 0.33
USP39Q53GS9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 PRORSD1P-202ENST00000563365 2154 ntBASIC17.12■□□□□ 0.33
USP39Q53GS9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
USP39Q53GS9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.12■□□□□ 0.33
USP39Q53GS9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms