Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 COX20P2-201ENST00000452636 358 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC112482.1-201ENST00000492080 688 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC027601.4-201ENST00000611259 610 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC079602.3-201ENST00000623931 403 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC148477.8-201ENST00000624298 468 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 AC233702.3-201ENST00000578656 1387 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 UBALD1-205ENST00000590891 2641 ntBASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 MIR662-201ENST00000384847 95 ntBASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SLC25A1P3-201ENST00000395415 828 ntBASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 AC090616.6-201ENST00000582640 721 ntBASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 KRT18P28-201ENST00000453838 1332 ntBASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 AL365209.1-201ENST00000624418 6473 ntBASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms