Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.64□□□□□ -0.23
CX3CL1P78423 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CX3CL1P78423 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CX3CL1P78423 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.64□□□□□ -0.23
CX3CL1P78423 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.64□□□□□ -0.23
CX3CL1P78423 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.64□□□□□ -0.23
CX3CL1P78423 AC025062.2-201ENST00000605477 670 ntBASIC13.64□□□□□ -0.23
CX3CL1P78423 AL353135.1-201ENST00000606729 504 ntBASIC13.64□□□□□ -0.23
CX3CL1P78423 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CX3CL1P78423 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 AC092053.1-201ENST00000605787 1936 ntBASIC13.64□□□□□ -0.23
CX3CL1P78423 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.64□□□□□ -0.23
CX3CL1P78423 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.64□□□□□ -0.23
CX3CL1P78423 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CX3CL1P78423 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.64□□□□□ -0.23
CX3CL1P78423 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CX3CL1P78423 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
CX3CL1P78423 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CX3CL1P78423 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 FAM197Y8-203ENST00000450145 560 ntBASIC13.63□□□□□ -0.23
CX3CL1P78423 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 RNPS1P1-201ENST00000507437 918 ntBASIC13.63□□□□□ -0.23
CX3CL1P78423 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.63□□□□□ -0.23
CX3CL1P78423 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.63□□□□□ -0.23
CX3CL1P78423 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.63□□□□□ -0.23
CX3CL1P78423 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CL1P78423 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
CX3CL1P78423 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.63□□□□□ -0.23
CX3CL1P78423 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CL1P78423 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CX3CL1P78423 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CL1P78423 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CL1P78423 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CL1P78423 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms