Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RNF4P78317 PCDHB17P-201ENST00000539533 2393 ntBASIC15.61■□□□□ 0.09
RNF4P78317 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
RNF4P78317 AL513477.1-201ENST00000602865 2407 ntBASIC15.6■□□□□ 0.09
RNF4P78317 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
RNF4P78317 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
RNF4P78317 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.6■□□□□ 0.09
RNF4P78317 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.6■□□□□ 0.09
RNF4P78317 RPSAP43-201ENST00000402237 625 ntBASIC15.6■□□□□ 0.09
RNF4P78317 HMGA1P7-201ENST00000406908 502 ntBASIC15.6■□□□□ 0.09
RNF4P78317 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.6■□□□□ 0.09
RNF4P78317 UPF3AP3-201ENST00000420996 769 ntBASIC15.6■□□□□ 0.09
RNF4P78317 GPX1P2-201ENST00000429271 606 ntBASIC15.6■□□□□ 0.09
RNF4P78317 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.6■□□□□ 0.09
RNF4P78317 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.6■□□□□ 0.09
RNF4P78317 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.6■□□□□ 0.09
RNF4P78317 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.6■□□□□ 0.09
RNF4P78317 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
RNF4P78317 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.6■□□□□ 0.09
RNF4P78317 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.6■□□□□ 0.09
RNF4P78317 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
RNF4P78317 AC012313.1-201ENST00000593393 3059 ntBASIC15.6■□□□□ 0.09
RNF4P78317 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
RNF4P78317 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RNF4P78317 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
RNF4P78317 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
RNF4P78317 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.59■□□□□ 0.09
RNF4P78317 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.59■□□□□ 0.09
RNF4P78317 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 AC112482.1-201ENST00000492080 688 ntBASIC15.59■□□□□ 0.09
RNF4P78317 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.59■□□□□ 0.09
RNF4P78317 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.59■□□□□ 0.09
RNF4P78317 MIR4492-201ENST00000581627 80 ntBASIC15.59■□□□□ 0.09
RNF4P78317 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 C20orf181-201ENST00000623918 480 ntBASIC15.59■□□□□ 0.09
RNF4P78317 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.59■□□□□ 0.09
RNF4P78317 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
RNF4P78317 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 CROCCP1-201ENST00000426910 5675 ntBASIC15.59■□□□□ 0.09
RNF4P78317 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RNF4P78317 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RNF4P78317 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.58■□□□□ 0.09
RNF4P78317 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
RNF4P78317 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.58■□□□□ 0.09
RNF4P78317 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.58■□□□□ 0.09
RNF4P78317 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
RNF4P78317 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.58■□□□□ 0.09
RNF4P78317 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
RNF4P78317 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
RNF4P78317 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms