Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC11.91□□□□□ -0.5
CKS1BP61024 AC026471.5-201ENST00000615068 467 ntBASIC11.91□□□□□ -0.5
CKS1BP61024 LINC01451-201ENST00000623792 534 ntBASIC11.91□□□□□ -0.5
CKS1BP61024 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
CKS1BP61024 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CKS1BP61024 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC11.91□□□□□ -0.5
CKS1BP61024 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC11.91□□□□□ -0.5
CKS1BP61024 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
CKS1BP61024 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC11.91□□□□□ -0.5
CKS1BP61024 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CKS1BP61024 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CKS1BP61024 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC11.9□□□□□ -0.5
CKS1BP61024 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC11.9□□□□□ -0.5
CKS1BP61024 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 REEP1-209ENST00000541910 969 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC11.9□□□□□ -0.5
CKS1BP61024 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC11.9□□□□□ -0.5
CKS1BP61024 C2orf69P3-201ENST00000565542 1120 ntBASIC11.9□□□□□ -0.5
CKS1BP61024 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 MIR4651-201ENST00000582622 73 ntBASIC11.9□□□□□ -0.5
CKS1BP61024 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC11.9□□□□□ -0.5
CKS1BP61024 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC11.9□□□□□ -0.5
CKS1BP61024 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS1BP61024 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
CKS1BP61024 AC139749.1-202ENST00000617529 3139 ntBASIC11.9□□□□□ -0.5
CKS1BP61024 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS1BP61024 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC11.9□□□□□ -0.51
CKS1BP61024 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
CKS1BP61024 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CKS1BP61024 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS1BP61024 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC11.89□□□□□ -0.51
CKS1BP61024 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CKS1BP61024 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
CKS1BP61024 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS1BP61024 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS1BP61024 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS1BP61024 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
CKS1BP61024 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms